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The 12 Best Hotels in Rochester, MN

Rochester, Minnesota, is a hidden-gem travel destination that has something for everyone. Whether you’re traveling for work, in town for a medical procedure at the Mayo Clinic or just visiting for fun, Rochester hotels have you covered.

Keep reading to find out which of the many hotels in Rochester is the right one for you.

Hotels in Rochester

Hotels Near the Mayo Clinic

If you’re coming to Rochester to work, study or receive medical care at the world-renowned Mayo Clinic, finding a hotel in close walking or driving distance is a priority for you. Here are our top three picks for the best hotels in Rochester based on their proximity to Mayo.

1. The Berkman

  • $$$
  • Pets allowed
  • Heated outdoor pool
  • Fitness center
  • Shuttle services
  • Kids stay for free

The Berkman is a beautiful, modern hotel in Rochester, Minnesota, with all the accommodations you could think of! This hotel is the perfect place for visits of any length. Every unit has a kitchen as well as a washer and dryer, so you can make yourself right at home. With super friendly and helpful staff, you’ll never need to worry about your requests going unfulfilled.

Located right across the street from Saint Mary’s Campus of the Mayo Clinic, the Berkman is also a short walk from other Mayo Clinic buildings. However, the hotel also offers a patient shuttle service that is quick and easy to use.


2. Hyatt House Rochester/Mayo Clinic Area

Hyatt House Rochester
  • $$$
  • Pets allowed
  • Indoor pool and hot tub
  • Fitness center
  • Shuttle services
  • Kids stay for free

When it comes to hotels in Rochester, the Hyatt House Rochester/Mayo Clinic Area can’t be beat! With its colorful and welcoming decor, this hotel will leave you comfortable and well-fed with its complimentary breakfasts and soup in the evening.

This hotel is only three blocks away from the Mayo Clinic, so it’s incredibly easy to get to. However, if you’re unable to make the walk or if you need to get to another area of Mayo, you can take advantage of the Hyatt House’s complimentary shuttle service.


3. Courtyard Rochester Mayo Clinic Area/Saint Marys

  • $$
  • Indoor pool and hot tub
  • Fitness center
  • Shuttle services
  • Kids stay for free

If you’re looking for a reliable and homey option in Rochester hotels, the Courtyard Rochester Mayo Clinic Area/Saint Marys is a great choice. As an example of one of its many amenities, most rooms have an attached balcony, which offers a unique way to get some fresh air any time of day.

Given its proximity to the Mayo Clinic’s Saint Marys campus, this hotel is a solid option if you’re looking for a place to stay that’s right across the street from the hospital. For guests who need to travel to a different Mayo campus, the Courtyard Rochester offers a shuttle that runs Monday through Saturday.


Pet Friendly Hotels

Sometimes it can be difficult to find a pet-friendly hotel that works when you want your furry friend to accompany you on a trip. However, there’s no lack of hotels in Rochester that are welcoming to pets of all shapes and sizes! Below are some of our favorites.

4. Hilton Rochester Mayo Clinic Area

Hilton Rochester
  • $$$
  • Pets allowed
  • Indoor pool and hot tub
  • Fitness center
  • Shuttle services
  • Kids stay for free

The Hilton Rochester Mayo Clinic Area provides a clean and relaxing environment that every member of your family will enjoy! This hotel is home to some next-level features, including an executive lounge with an amazing view and easy access to the Mayo Clinic via an attached skyway.


5. Fairfield Inn & Suites Rochester Mayo Clinic Area/Saint Marys

  • $
  • Pets allowed
  • Indoor pool
  • Fitness center
  • Shuttle services
  • Kids stay for free

The Fairfield Inn & Suites Rochester Mayo Clinic Area/Saint Marys is one of those Rochester hotels that has it all for a fairly low price! In addition to the host of amenities that the hotel itself offers, it also boasts a location that provides easy access to a number of restaurants as well as a grocery store.

For guests who do choose to bring along a furry friend, this pet-friendly hotel offers the perfect spot! It’s right next to Cascade Creek Trail, a beautiful walking path, and an outdoor area where you can take your pet for some quality time in nature.


6. Aspen Suites Rochester

Aspen Sweets Rochester
  • $$$
  • Pets allowed
  • Fitness center
  • Shuttle services
  • Kids stay for free

The Aspen Suites Rochester is an inviting and warm hotel that makes our list of one of the best hotels in Rochester. With a heated, indoor parking garage, this hotel will offer you an amazing stay from the very second you arrive!

In terms of pet-friendly accommodations, the hotel offers a specific pet-friendly floor that is both quiet and clean. Sometimes the hotel even provides complimentary treats and poop bags upon arrival, which is just one of many signs you’ll see that your pet is welcome here!


Cheap Hotels

Travel costs can build up pretty quickly, so it’s important to find a lodging option that’s within your price range. Luckily, this won’t be a problem when looking for hotels in Rochester!

Keep reading to find some of the best hotels in Rochester that don’t sacrifice quality for a low price.

7. La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S

  • $
  • Pets allowed
  • Indoor pool
  • Fitness center
  • Shuttle services
  • Kids stay for free

The La Quinta Inn & Suites Rochester Mayo Clinic S is one of our top picks for cheap hotels in Rochester! It checks all the boxes of amenities you might be looking for at a great price.

For example, the La Quinta Inn & Suites Rochester is a fun place for all ages to stay, with a kiddie pool, a regular pool, and a hot tub. Don’t miss the free breakfast, which is held in a spacious and inviting dining area. Pets are even welcome here, too!


8. Hampton Inn Rochester

Hampton Rochester
  • $
  • Indoor pool and hot tub
  • Fitness center
  • Shuttle services
  • Kids stay for free

While you have a long list of Rochester hotels to choose from, the Hampton Inn Rochester is at the top if you’re looking for a simple yet high-quality place to stay! This particular hotel is a clean and welcoming place with great access to restaurants and shopping nearby.

One of the best aspects of the Hampton Inn Rochester is their flexibility with guests’ needs and schedules. Early check-in is a breeze, and they even have limited breakfast offerings ready early in the morning if you need to get an early start to the day.

Plus, the pool is open 24/7, so you can still enjoy all the benefits this hotel has to offer, no matter your schedule!


9. Comfort Inn & Suites West – Medical Center

  • $
  • Indoor pool and hot tub
  • Fitness center
  • Kids stay for free

The Comfort Inn & Suites West – Medical Center is a convenient and affordable place to stay for people looking not to spend too much on travel. This hotel provides neat and quiet lodging complete with stellar service and amenities like a shuttle service, indoor pool, and hot breakfast to boot.

In addition, the hotel is directly next to a restaurant and is surrounded by a variety of dining options, so you’ll definitely be able to find something that will satisfy your appetite.


Hotels With Pools

A hotel with a pool can be a huge benefit for people with kids who need to burn some energy or even for adults who want to relax in the hot tub or swim some laps for exercise.

Dive into this round-up of our favorite Rochester hotels with pools and find one for your next stay!

10. Homewood Suites by Hilton Rochester Mayo Clinic Area/Saint Marys

Homewood Suites Rochester
  • $$
  • Indoor pool
  • Fitness center
  • Shuttle services
  • Kids stay for free

The Homewood Suites by Hilton Rochester Mayo Clinic Area/Saint Marys offers the luxury of hotel living while still providing a home away from home.

It houses both a pool and a whirlpool in a clean and well-maintained indoor swimming area. One notable feature of the indoor swimming area is that there are multiple accessible lifts that allow people of all abilities to safely use the pools.

Not only does this hotel have state-of-the-art pool facilities, but it also boasts an outdoor basketball court and patio area for those warmer Minnesota months!


11. Hampton Inn & Suites Rochester-North

  • $
  • Indoor pool and hot tub
  • Fitness center
  • Shuttle services
  • Kids stay for free

The Hampton Inn & Suites Rochester-North is another fantastic lower-priced option for those who are looking for a comprehensive experience that won’t break the bank.

This hotel also has both an indoor pool and hot tub. The space is framed by floor-to-ceiling windows, which allows for lots of beautiful natural light. Plus, you’ll never be in need of essentials while swimming because the pool area is fully stocked with towels and has an attached restroom complete with showers.


12. Home2 Suites by Hilton Rochester Mayo Clinic Area

Home 2 Rochester
  • $$
  • Pets allowed
  • Indoor pool
  • Fitness center
  • Shuttle services
  • Kids stay for free

Once you give it a try, the Home2 Suites by Hilton Rochester Mayo Clinic Area will quickly become your go-to out of all the hotels in Rochester!

This hotel features a fun and colorful indoor swimming area complete with a pool and hot tub. One side of the pool area leads to a cool outdoor patio, while the other side overlooks a lush forest view. You really can’t go wrong with relaxing in a hotel like this!


Finding the Best Hotels in Rochester

When visiting Rochester, Minnesota, you have tons of options for where to stay. Hopefully after taking a look through our analysis of the best hotels in Rochester, you’ve found one that fits your needs and budget!
If you found this guide helpful and want to explore hotel options in other areas of Minnesota too, check out our Places to Stay page.